stem-cells

Scientific Agent for evidence-grounded evaluation of cell-therapy products.

💊🩺🩹 List of Awesome Open-Source Regenerative Medicine Tools🌟 Star if you like it! 🌟

Jupyter notebooks for analyzing data from a study on Shh⁺ cell lineage and gene expression in regenerating axolotl spinal cords.

Originally developed for scientific outreach presentation at the SFBD-JSDB Conference 2022 held at Strasbourg.

OSCI: Ontology for Stem Cell Investigations

Comprehensive Enumeration of Cancer Stem-like Cell Heterogeneity Using Deep Neural Network

ColonyQuant is a command-line toolkit for fully automated quantification and morphometric analysis of AP-stained embryonic stem cell colonies, with integrated visualization and clustering workflows.

Single-cell RNA-seq analysis — Pandey et al. 2022

"Transcriptional Heterogeneity and Cell Cycle Regulation as Central Determinants of Primitive Endoderm Priming" published in eLife (2022)

Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet

Hybrid Analytical–Numerical Modeling of Electroporation Dynamics and Swept-Frequency Impedance Spectroscopy for Label-Free Characterization of hMSCs in a Microfluidic Platform — Sherif, Ghallab & Ismail

A collection of summaries and reflective notes from molecular biology courses, including genetics, epigenetics, gene regulation, genome interpretation, stem cells and RNA biology, designed to strengthen fundamental knowledge and bridge classical molecular biology with modern applications in cancer research and bioinformatics.

Un proyecto universitario que consiste en dos etapas. La primera; recopilar información pública de la web utilizando webscraping avanzado, acerca de diferentes casos de estudio sobre células madre pluripotentes humanas. Finalmente, analiza los aspectos que influyen en la duración de los estudios mediante un árbol de decisión regresor.

An open-source, calibrated multiphysics digital twin for Type 1 Diabetes islet encapsulation and hypoimmune organoid transplant design.

Code for the MiSTR microfluidic stem cell atlas study of early human neural patterning.

A stem-cell differentiation copilot for computational biology teams — CABS 2026 intern project.

Balanced optimal transport for cell-state snapshots, with auditable couplings and synthetic ambiguity benchmarks.

King's College London MSc Dissertation Knowledge Exchange Program Project

Interactive scRNA-seq fate mapping of human hematopoietic stem/progenitor cells using Scanpy, CellRank, GPCCA and Streamlit.

Computational analysis of gene expression profiles to uncover key biomarkers distinguishing bone marrow and peripheral blood CD34+ stem cells, with applications in diagnostics and stem cell transplantation.