Computational Biologist · PhD candidate at Helmholtz Munich Single-cell & spatial biology · Lung fibrosis/IPF · Translational multi-omics for target discovery & biomarkers
🔎 Open to Senior Scientist roles in therapeutics companies (computational biology for target discovery, single-cell & spatial biology), from July 2027. More at ramadatta.github.io.
- Human & mouse lung sc/snRNA-seq and multi-omics to map fibrotic cell states and gene regulatory programs
- Perturbation studies in human precision-cut lung slices (time-resolved snRNA-seq)
- Interactive web apps & LLM tools that make single-cell data and literature easier to explore
- Previously: clinical bacterial genomics & AMR surveillance (NCID Singapore), fish genome assembly
- 😄 Pronouns: He/Him
| Tool | What it does | Links |
|---|---|---|
| MAPLE | Literature-grounded cell type annotation from marker genes, with PMID-backed evidence | Hugging Face |
| MarkerMind | Extracts cell types, marker genes, methods and context from papers (Gemini) | App · Code |
| RUMAPS | Refined, cleanly labeled, interactive UMAPs for scanpy/anndata | Code |
| CPgeneProfiler | R package to profile carbapenemase genes from genome assemblies (JOSS) | Code |
| Bleomycin Aging App | R Shiny explorer for lung aging and regeneration data | App · Tutorial |
Python · R · Scanpy · Seurat · Bioconductor · Shiny · Bash/AWK/SED · HPC · AWS · Git
- pip install does not seem to install software
- R package installation error: API rate limit exceeded for
- SCENIC - GRN prediction time
- Troubleshooting Module Import Issues in Jupyter Notebook
- How to Access SMB Shares on Linux: A Step-by-Step Guide
➡️ All posts: The Lab Notebook · Older fixes: A Search For Solutions