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@cmmr

Alkek Center for Metagenomics and Microbiome Research

CMMR researchers develop molecular and informatic tools to advance clinical microbiome research.

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  1. EsViritu EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    Python 57 10

  2. Marker-MAGu Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    Python 23 1

  3. virmap virmap Public

    Perl 25 14

Repositories

Showing 10 of 19 repositories
  • nextflow Public

    16S and WGS Pipelines

    cmmr/nextflow's past year of commit activity
    Shell 0 0 0 0 Updated Oct 8, 2026
  • EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    cmmr/EsViritu's past year of commit activity
    Python 57 MIT 10 4 0 Updated Oct 7, 2026
  • rbiom Public

    An R Package for Integrated Analysis and Visualization of Microbiome Data

    cmmr/rbiom's past year of commit activity
    R 19 1 3 0 Updated Oct 2, 2026
  • fillpattern Public

    Patterned Fills for R's ggplot2 and grid Graphics

    cmmr/fillpattern's past year of commit activity
    R 14 1 0 0 Updated Oct 2, 2026
  • ecodive Public

    Parallel and Memory-Efficient R Package for Ecological Diversity Analysis

    cmmr/ecodive's past year of commit activity
    R 9 0 0 0 Updated Oct 2, 2026
  • hdf5lib Public

    HDF5 C Library for R

    cmmr/hdf5lib's past year of commit activity
    C 2 0 0 0 Updated Oct 2, 2026
  • h5lite Public

    Read/write HDF5 datasets and attributes from R

    cmmr/h5lite's past year of commit activity
    R 3 0 1 0 Updated Oct 2, 2026
  • ogb_brain_virome_analysis Public

    Analysis repo for HVP OGB brain virome data

    cmmr/ogb_brain_virome_analysis's past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 25, 2026
  • cmmr.github.io Public

    CMMR Developer News

    cmmr/cmmr.github.io's past year of commit activity
    HTML 0 0 0 0 Updated Mar 7, 2026
  • Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    cmmr/Marker-MAGu's past year of commit activity
    Python 23 MIT 1 4 0 Updated Nov 24, 2025
View all repositories

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